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2010
Transposable Elements in Reptilian and Avian (Sauropsida) Genomes., Kordis, D. , Cytogenetic and genome research, 2010 Mar 6, (2010) Abstract
Dopamine receptors in a songbird brain., Kubikova, Lubica, Wada Kazuhiro, and Jarvis Erich D. , The Journal of comparative neurology, 2010 Mar 15, Volume 518, Issue 6, p.741-69, (2010) Abstract
Comparative genomics based on massive parallel transcriptome sequencing reveals patterns of substitution and selection across 10 bird species., Künstner, Axel, Wolf Jochen B. W., Backström Niclas, Whitney Osceola, Balakrishnan Christopher N., Day Lainy, Edwards Scott V., Janes Daniel E., Schlinger Barney A., Wilson Richard K., et al. , Molecular ecology, 2010 Mar, Volume 19 Suppl 1, p.266-76, (2010) Abstract
The genome of a songbird., Warren, Wesley C., Clayton David F., Ellegren Hans, Arnold Arthur P., Hillier LaDeana W., Künstner Axel, Searle Steve, White Simon, Vilella Albert J., Fairley Susan, et al. , Nature, 2010 Apr 1, Volume 464, Issue 7289, p.757-62, (2010) Abstract
Gene duplication and fragmentation in the zebra finch major histocompatibility complex., Balakrishnan, Christopher N., Ekblom Robert, Volker Martin, Westerdahl Helena, Godinez Ricardo, Kotkiewicz Holly, Burt David W., Graves Tina, Griffin Darren K., Warren Wesley C., et al. , BMC biology, 2010 Apr 1, Volume 8, Issue 1, p.29, (2010) Abstract
Genomic and neural analysis of the estradiol-synthetic pathway in the zebra finch., London, Sarah E., and Clayton David F. , BMC neuroscience, 2010 Apr 1, Volume 11, Issue 1, p.46, (2010) Abstract
Comparative genomic analysis of the zebra finch degradome provides new insights into evolution of proteases in birds and mammals., Quesada, Victor, Velasco Gloria, Puente Xose S., Warren Wesley C., and Lopez-Otin Carlos , BMC genomics, 2010 Apr 1, Volume 11, Issue 1, p.220, (2010) Abstract
Evolution of a cluster of innate immune genes (beta-defensins) along the ancestral lines of chicken and zebra finch., Hellgren, Olof, and Ekblom Robert , Immunome research, 2010 Apr 1, Volume 6, Issue 1, p.3, (2010) Abstract
The zebra finch neuropeptidome: prediction, detection and expression., Xie, Fang, London Sarah E., Southey Bruce R., Annangudi Suresh P., Amare Andinet, Rodriguez-Zas Sandra L., Clayton David F., and Sweedler Jonathan V. , BMC biology, 2010 Apr 1, Volume 8, Issue 1, p.28, (2010) Abstract
Copy number variation, chromosome rearrangement, and their association with recombination during avian evolution., Völker, Martin, Backström Niclas, Skinner Benjamin M., Langley Elizabeth J., Bunzey Sydney K., Ellegren Hans, and Griffin Darren K. , Genome research, 2010 Apr, Volume 20, Issue 4, p.503-11, (2010) Abstract
Pronounced inter- and intrachromosomal variation in linkage disequilibrium across the zebra finch genome., Stapley, Jessica, Birkhead Tim R., Burke Terry, and Slate Jon , Genome research, 2010 Apr, Volume 20, Issue 4, p.496-502, (2010) Abstract
The recombination landscape of the zebra finch Taeniopygia guttata genome., Backström, Niclas, Forstmeier Wolfgang, Schielzeth Holger, Mellenius Harriet, Nam Kiwoong, Bolund Elisabeth, Webster Matthew T., Ost Torbjörn, Schneider Melanie, Kempenaers Bart, et al. , Genome research, 2010 Apr, Volume 20, Issue 4, p.485-95, (2010) Abstract
Sex bias and dosage compensation in the zebra finch versus chicken genomes: general and specialized patterns among birds., Itoh, Yuichiro, Replogle Kirstin, Kim Yong-Hwan, Wade Juli, Clayton David F., and Arnold Arthur P. , Genome research, 2010 Apr, Volume 20, Issue 4, p.512-8, (2010) Abstract
Effort required to finish shotgun-generated genome sequences differs significantly among vertebrates., Blakesley, Robert W., Hansen Nancy F., Gupta Jyoti, McDowell Jennifer C., Maskeri Baishali, Barnabas Beatrice B., Brooks Shelise Y., Coleman Holly, Haghighi Payam, Ho Shi-Ling, et al. , BMC genomics, 2010, Volume 11, p.21, (2010) Abstract
Genomic organization and molecular phylogenies of the beta (beta) keratin multigene family in the chicken (Gallus gallus) and zebra finch (Taeniopygia guttata): implications for feather evolution., Greenwold, Matthew J., and Sawyer Roger H. , BMC evolutionary biology, 2010, Volume 10, p.148, (2010) Abstract
2009
Integrating genomes, brain and behavior in the study of songbirds., Clayton, David F., Balakrishnan Christopher N., and London Sarah E. , Current biology : CB, 2009 Sep 29, Volume 19, Issue 18, p.R865-73, (2009) Abstract
Genome 10K: a proposal to obtain whole-genome sequence for 10,000 vertebrate species., , The Journal of heredity, 2009 Nov-Dec, Volume 100, Issue 6, p.659-74, (2009) Abstract
Next-generation sequencing of vertebrate experimental organisms., Turner, Daniel J., Keane Thomas M., Sudbery Ian, and Adams David J. , Mammalian genome : official journal of the International Mammalian Genome Society, 2009 Jun, Volume 20, Issue 6, p.327-38, (2009) Abstract
Developmental shifts in gene expression in the auditory forebrain during the sensitive period for song learning., London, Sarah E., Dong Shu, Replogle Kirstin, and Clayton David F. , Developmental neurobiology, 2009 Jun, Volume 69, Issue 7, p.437-50, (2009) Abstract
Programmed loss of millions of base pairs from a vertebrate genome., Smith, Jeramiah J., Antonacci Francesca, Eichler Evan E., and Amemiya Chris T. , Proceedings of the National Academy of Sciences of the United States of America, 2009 Jul 7, Volume 106, Issue 27, p.11212-7, (2009) Abstract
Genomic regulatory blocks in vertebrates and implications in human disease., Navratilova, Pavla, and Becker Thomas S. , Briefings in functional genomics & proteomics, 2009 Jul, Volume 8, Issue 4, p.333-42, (2009) Abstract
Evolution of gene function and regulatory control after whole-genome duplication: comparative analyses in vertebrates., Kassahn, Karin S., Dang Vinh T., Wilkins Simon J., Perkins Andrew C., and Ragan Mark A. , Genome research, 2009 Aug, Volume 19, Issue 8, p.1404-18, (2009) Abstract
The evolution of isochore patterns in vertebrate genomes., Costantini, Maria, Cammarano Rosalia, and Bernardi Giorgio , BMC genomics, 2009, Volume 10, p.146, (2009) Abstract
Applications of ultra-high-throughput sequencing., Fox, Samuel, Filichkin Sergei, and Mockler Todd C. , Methods in molecular biology (Clifton, N.J.), 2009, Volume 553, p.79-108, (2009) Abstract
Sexual differentiation of the zebra finch song system: potential roles for sex chromosome genes., Tomaszycki, Michelle L., Peabody Camilla, Replogle Kirstin, Clayton David F., Tempelman Robert J., and Wade Juli , BMC neuroscience, 2009, Volume 10, p.24, (2009) Abstract