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biosoftware_bench BLAST Server

Demonstration

Some data have been pre-loaded, and databases selected. Please run the search using the "Run Search" button at the bottom or go back to the standard BLAST.

Available algorithms

blastn

BLASTN allows you to search a nucleotide database with a nucleotide sequence query.

Enter query sequence in simple text or FASTA format:

>zebrafinch_AMPA_GluR2
TGGAAATGCAAAAGATTATGCATATTTCTGTCTTCCTGGCTCCTGTGTTGTGGGGACTGATCTGGGGGGTCAATTCTAAC
AGCATACAGATCGGGGGGCTGTTCCCGAGGGGCGCCGATCAGGAGTACAGCGCGTTTCGGGTAGGGATGGTTCAGTATTC
CACCTCGGAGTTCAGGCTGACTCCCCACATCGACAACCTGGAGGTGGCCAACAGCTTCGCCGTCACCAACGCCTTCTGCT
CCCAGTTTTCAAGAGGAGTCTTTGCTATTTTTGGATTCTATGACAAGAAGTCTGTAAATACGATAACATCCTTCTGTGGG
ACTCTTCATGTCTCCTTCATAACTCCCAGCTTCCCAACAGATGGAACCCATCCCTTTGTCATTCAGATGAGACCTGACCT
CAAGGGAGCTCTTCTTAGCTTGATTGAATACTATCAGTGGACCAAGTTTGCATATTTGTATGACAGTGACAGAGGCTTAT
CAACGTTGCGAGCTGTGCTGGATTCAGCTGCTGAAAAGAAATGGCAAGTGACTGCTATCAATGTAGGAAATATTAACAAT
GAGAGAAAAGATGAAACATACCGTTCACTGTTTCAAGATCTAGAGGTAAAAAAGGAAAGGCGGGTGATTTTGGACTGTGA
ACGCGATAAAGTCAACGACATTGTTGATCAGGTCATCACAATTGGTAAACATGTTAAAGGATACCACTATATCATTGCAA
ATCTGGGATTTACTGATGGAGATTTGTCAAAAATTCAGTTTGGAGGAGCTAATGTCTCAGGATTTCAGATAGTTGACTAT
GATGATCCTGTGGTGTCAAAATTTATACAACGTTGGTCAACACTGGAGGAGAAAGAATATCCTGGTGCACACACTAGTAC
AATAAAGTATACCTCTGCTCTGACCTATGATGCGGTTCAAGTGATGACAGAAGCTTTCCGTAATTTGCGTAAACAGAGGA
TTGAGATCTCCATAAGAGGAAATGCTGGAGATTGTCTTGCAAATCCAGCTGTACCGTGGGGTCATGGTGTAGAAATAGAA
AGGGCATTGAAACAGGTTCAGGTGGAAGGGCTAACAGGAAATATCAAGTTTGATCAGAATGGAAAGAGAATCAATTTTAC
AATAAACGTCATGGAACTCAAAAGTACCGGTCCTCGGAAGATTGGATATTGGAGTGAAGTGGACAAAATGGTCGTGAATC
CTCTTGACGGCCCTCTTGGAAATGGATCTTCAGGACTAGAGAATAAGACTATTATTGCCACCACTATTTTGGAGTCCCCA
TATGTCATGATGAAGAAAAATCACGAAATGCTTGAAGGAAATGATCGATATGAGGGCTATTGTGTGGACTTAGCTACAGA
AATTGCTAAGCACTGTGGATTCAAATATAAGCTCACAATTGTTGGGGATGGCAAGTATGGGGCAAGGGATGCAGACACGA
AAATCTGGAATGGGATGGTTGGAGAACTTGTTTATGGGAAAGCCGATATTGCAATTGCTCCATTAACTATAACATCGGTG
AGAGAAGAGGTGATTGACTTCTCAAAGCCCTTTATGAGCCTGGGGATATCAATAATGATCAAGAAGCCTCAGAAGTCCAA
GCCAGGAGTGTTTTCATTTCTTGATCCGTTAGCATATGAAATCTGGATGTGCATTGTTTTTGCCTACATTGGGGTCAGTG
TAGTTTTATTCCTGGTCAGCAGATTTAGCCCATACGAGTGGCACACTGAGGAATTTGAAGATGGAAGAGAAACGCAAACT
AATGAATCAACTAATGAATTTGGGATATTTAATAGTCTCTGGTTTTCCCTGGGTGCCTTTATGCGGCAAGGATGCGATAT
TTCGCCAAGATCCCTGTCGGGGCGCATTGTTGGAGGTGTGTGGTGGTTCTTTACCCTCATCATAATCTCATCCTACACGG
CTAACTTAGCTGCCTTCCTGACGGTTGAGAGGATGGTGTCTCCCATTGAAAGTGCTGAGGATCTTTCCAAGCAAACAGAA
ATTGCTTATGGGACATTAGATTCTGGCTCCACTAAAGAGTTTTTTAGGAGATCTAAAATTGCAGTATTTGATAAAATGTG
GACCTATATGAAAAGTGCAGAACCATCTGTGTTTGTGAGGACTACAGCAGAAGGGGTAGCTCGAGTACGGAAGTCCAAAG
GAAAATATGCCTACTTGCTGGAGTCAACCATGAATGAGTACATCGAACAAAGGAAACCCTGTGACACCATGAAAGTTGGT
GGGAATTTGGATTCCAAAGGCTACGGCGTCGCCACACCTAAAGGATCTTCATTAGGAACCCCAGTAAATCTTGCAGTATT
GAAACTCAGTGAGCAAGGCGTCTTAGACAAGCTGAAAAACAAATGGTGGTACGATAAAGGTGAATGTGGAGCCAAGGACT
CTGGAAGTAAGGAGAAGACCAGTGCCCTCAGTCTGAGCAACGTAGCAGGAGTCTTCTACATTCTCGTCGGGGGACTTGGT
TTGGCCATGCTGGTGGCTTTGATTGAGTTTTGTTACAAGTCAAGAGCTGAGGCGAAACGAATGAAGGTGGCAAAGAATGC
ACAGAATATTAATCCAACTTCCTCACAGAATTCGCAGAATTTTGCAACTTACAAGGAAGGTTACAACGTATATGGAATCG
AAAGTGTTAAAATTTAGGGGATGACCTTGA

or upload query sequence in FASTA format:

Please give a text file, not a MS-Word or other document, you can upload up to 10 Mb.

Dataset(s):

multiples allowed (use option/control keys; likewise to deselect).

or upload your own database:

Please give a text file, not a MS-Word or other document, you can upload up to 10 Mb.

Advance Search Parameters

Scoring matrix:

Filtering:

Low complexity regions

Lower-case letters

E-value cutoff:

Advanced BLAST options:

ungapped

megablast

Query genetic code:

DB genetic code:

Frame shift penalty:

Number of results:

tblastn

TBLASTN allows you to search a nucleotide database with a protein sequence query.

Enter query sequence in simple text or FASTA format:

or upload query sequence in FASTA format:

Please give a text file, not a MS-Word or other document, you can upload up to 10 Mb.

Dataset(s):

multiples allowed (use option/control keys; likewise to deselect).

or upload your own database:

Please give a text file, not a MS-Word or other document, you can upload up to 10 Mb.

Advance Search Parameters

Scoring matrix:

Filtering:

Low complexity regions

Lower-case letters

E-value cutoff:

Advanced BLAST options:

ungapped

megablast

Query genetic code:

DB genetic code:

Frame shift penalty:

Number of results:

tblastx

TBLASTX allows you to search a nucleotide database with a nucleotide sequence query.

Enter query sequence in simple text or in FASTA format:

or upload query sequence in FASTA format:

Please give a text file, not a MS-Word or other document, you can upload up to 10 Mb.

Dataset(s):

multiples allowed (use option/control keys; likewise to deselect).

or upload your own database:

Please give a text file, not a MS-Word or other document, you can upload up to 10 Mb.

Advance Search Parameters

Scoring matrix:

Filtering:

Low complexity regions

Lower-case letters

E-value cutoff:

Advanced BLAST options:

ungapped

megablast

Query genetic code:

DB genetic code:

Frame shift penalty:

Number of results:

blastp

BLASTP allows you to search a protein database with a protein sequence query.

Enter query sequence in simple text or FASTA format:

or upload query sequence in FASTA format:

Please give a text file, not a MS-Word or other document, you can upload up to 10 Mb.

Dataset(s):

multiples allowed (use option/control keys; likewise to deselect).

or upload your own database:

Please give a text file, not a MS-Word or other document, you can upload up to 10 Mb.

Advance Search Parameters

Scoring matrix:

Filtering:

Low complexity regions

Lower-case letters

E-value cutoff:

Advanced BLAST options:

ungapped

megablast

Query genetic code:

DB genetic code:

Frame shift penalty:

Number of results:

blastx

BLASTX allows you to search a protein database with a nucleotide sequence query.

Enter query sequence in simple text or FASTA format:

or upload query sequence in FASTA format:

Please give a text file, not a MS-Word or other document, you can upload up to 10 Mb.

Dataset(s):

multiples allowed (use option/control keys; likewise to deselect).

or upload your own database:

Please give a text file, not a MS-Word or other document, you can upload up to 10 Mb.

Advance Search Parameters

Scoring matrix:

Filtering:

Low complexity regions

Lower-case letters

E-value cutoff:

Advanced BLAST options:

ungapped

megablast

Query genetic code:

DB genetic code:

Frame shift penalty:

Number of results:

biosoftware_bench BLAST Server

Demonstration

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